Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs372308799 chr1:227392696 G/A 0 405 14.27 14.23 1.48 KM Plot
STAD rs372665560 chr1:227395052 CTTTT/C 0 405 14.27 14.45 1.48 KM Plot
STAD rs3756973 chr6:133080800 A/T 1.08E-6 406 14.27 13.7 2.53 KM Plot
STAD rs3765483 chr1:40723618 G/A 6.51E-9 393 14.93 12.6 3.13 KM Plot
STAD rs3770008 chr2:178535922 C/T 2.28E-5 406 14.67 14.05 7.27 KM Plot
STAD rs377483454 chr1:227441203 AGGAGAATCACTTGAATCCGGGAGGT/A 0 399 14.23 14.15 1.48 KM Plot
STAD rs3812314 chr7:158933239 A/C 2.93E-5 406 13.7 18.93 11.42 KM Plot
STAD rs3816067 chr8:26265306 A/G 8.51E-6 406 15 12.7 6.4 KM Plot
STAD rs381674 chr1:235667236 C/A 3.05E-5 388 13.4 15.23 15.6 KM Plot
STAD rs3858175 chr10:15139633 C/T 2.47E-5 404 14.42 13.83 2.73 KM Plot
STAD rs397905 chr1:235642606 C/T 3.78E-5 397 13.27 14.67 16.17 KM Plot
STAD rs412569 chr17:28943571 A/G 1.93E-5 398 14.13 16.53 9.8 KM Plot
STAD rs41270149 chr1:227406935 G/T 0 405 14.27 14.45 1.48 KM Plot
STAD rs41405044 chr19:9528489 A/G 8.06E-6 406 14.47 13.15 2.73 KM Plot
STAD rs423151 chr17:28952286 A/G 1.65E-5 406 14.13 16.53 9.8 KM Plot